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39{
40 namespace VectorOperations
41 {
-
42 using size_type = types::global_dof_index;
+
42 using size_type = types::global_dof_index;
43
44 template <typename T>
45 bool
@@ -226,13 +226,13 @@
149 void
150 parallel_for(
151 Functor & functor,
-
152 const size_type start,
-
153 const size_type end,
+
152 const size_type start,
+
153 const size_type end,
154 const std::shared_ptr<::parallel::internal::TBBPartitioner>
155 &partitioner)
156 {
157#ifdef DEAL_II_WITH_TBB
-
158 const size_type vec_size = end - start;
+
158 const size_type vec_size = end - start;
159 // only go to the parallel function in case there are at least 4 parallel
160 // items, otherwise the overhead is too large
161 if (vec_size >=
@@ -255,8 +255,8 @@
178 // TBBForFunctor. See also GitHub issue #2496 for further discussion
179 // of this strategy.
180 ::parallel::internal::parallel_for(
-
181 static_cast<size_type>(0),
-
182 static_cast<size_type>(generic_functor.n_chunks),
+
181 static_cast<size_type>(0),
+
182 static_cast<size_type>(generic_functor.n_chunks),
183 generic_functor,
184 1,
185 tbb_partitioner);
@@ -1060,17 +1060,17 @@
988 template <typename Operation, typename ResultType>
989 void
990 accumulate_recursive(const Operation &op,
-
991 const size_type first,
-
992 const size_type last,
+
991 const size_type first,
+
992 const size_type last,
993 ResultType & result)
994 {
-
995 const size_type vec_size = last - first;
+
995 const size_type vec_size = last - first;
996 if (vec_size <= vector_accumulation_recursion_threshold * 32)
997 {
998 // the vector is short enough so we perform the summation. first
999 // work on the regular part. The innermost 32 values are expanded in
1000 // order to obtain known loop bounds for most of the work.
-
1001 size_type index = first;
+
1001 size_type index = first;
1002 ResultType outer_results[vector_accumulation_recursion_threshold];
1003
1004 // set the zeroth element to zero to correctly handle the case where
@@ -1082,8 +1082,8 @@
1010 // outer_results[0,n_chunks) (ii) in the SIMD case n_chunks is also a
1011 // next free index in outer_results[] to which we can write after
1012 // accumulate_regular() is executed.
-
1013 size_type n_chunks = vec_size / 32;
-
1014 const size_type remainder = vec_size % 32;
+
1013 size_type n_chunks = vec_size / 32;
+
1014 const size_type remainder = vec_size % 32;
1015 Assert(remainder == 0 ||
1016 n_chunks < vector_accumulation_recursion_threshold,
1017 ExcInternalError());
@@ -1113,31 +1113,31 @@
1041 // such chunks since remainder < 32.
1042 // Work on those chunks without any SIMD, that is we call
1043 // op(index).
-
1044 const size_type inner_chunks = remainder / 8;
+
1044 const size_type inner_chunks = remainder / 8;
1045 Assert(inner_chunks <= 3, ExcInternalError());
-
1046 const size_type remainder_inner = remainder % 8;
+
1046 const size_type remainder_inner = remainder % 8;
1047 ResultType r0 = ResultType(), r1 = ResultType(),
1048 r2 = ResultType();
1049 switch (inner_chunks)
1050 {
1051 case 3:
1052 r2 = op(index++);
-
1053 for (size_type j = 1; j < 8; ++j)
+
1053 for (size_type j = 1; j < 8; ++j)
1054 r2 += op(index++);
1055 DEAL_II_FALLTHROUGH;
1056 case 2:
1057 r1 = op(index++);
-
1058 for (size_type j = 1; j < 8; ++j)
+
1058 for (size_type j = 1; j < 8; ++j)
1059 r1 += op(index++);
1060 r1 += r2;
1061 DEAL_II_FALLTHROUGH;
1062 case 1:
1063 r2 = op(index++);
-
1064 for (size_type j = 1; j < 8; ++j)
+
1064 for (size_type j = 1; j < 8; ++j)
1065 r2 += op(index++);
1066 DEAL_II_FALLTHROUGH;
1067 default:
-
1068 for (size_type j = 0; j < remainder_inner; ++j)
+
1068 for (size_type j = 0; j < remainder_inner; ++j)
1069 r0 += op(index++);
1070 r0 += r2;
1071 r0 += r1;
@@ -1161,7 +1161,7 @@
1089 {
1090 if (n_chunks % 2 == 1)
1091 outer_results[n_chunks++] = ResultType();
-
1092 for (size_type i = 0; i < n_chunks; i += 2)
+
1092 for (size_type i = 0; i < n_chunks; i += 2)
1093 outer_results[i / 2] = outer_results[i] + outer_results[i + 1];
1094 n_chunks /= 2;
1095 }
@@ -1172,7 +1172,7 @@
1100 // split vector into four pieces and work on the pieces
1101 // recursively. Make pieces (except last) divisible by one fourth the
1102 // recursion threshold.
-
1103 const size_type new_size =
+
1103 const size_type new_size =
1104 (vec_size / (vector_accumulation_recursion_threshold * 32)) *
1105 vector_accumulation_recursion_threshold * 8;
1106 Assert(first + 3 * new_size < last, ExcInternalError());
@@ -1199,21 +1199,21 @@
1127 void
1128 accumulate_regular(
1129 const Operation &op,
-
1130 const size_type &n_chunks,
-
1131 size_type & index,
+
1130 const size_type &n_chunks,
+
1131 size_type & index,
1132 ResultType (&outer_results)[vector_accumulation_recursion_threshold],
1133 std::integral_constant<bool, false>)
1134 {
1135 // note that each chunk is chosen to have a width of 32, thereby the index
1136 // is incremented by 4*8 for each @p i.
-
1137 for (size_type i = 0; i < n_chunks; ++i)
+
1137 for (size_type i = 0; i < n_chunks; ++i)
1138 {
1139 ResultType r0 = op(index);
1140 ResultType r1 = op(index + 1);
1141 ResultType r2 = op(index + 2);
1142 ResultType r3 = op(index + 3);
1143 index += 4;
-
1144 for (size_type j = 1; j < 8; ++j, index += 4)
+
1144 for (size_type j = 1; j < 8; ++j, index += 4)
1145 {
1146 r0 += op(index);
1147 r1 += op(index + 1);
@@ -1237,8 +1237,8 @@
1165 void
1166 accumulate_regular(
1167 const Operation &op,
-
1168 size_type & n_chunks,
-
1169 size_type & index,
+
1168 size_type & n_chunks,
+
1169 size_type & index,
1170 Number (&outer_results)[vector_accumulation_recursion_threshold],
1171 std::integral_constant<bool, true>)
1172 {
@@ -1249,15 +1249,15 @@
1177 // nvecs*(4*8) elements.
1178
1179 constexpr unsigned int nvecs = VectorizedArray<Number>::size();
-
1180 const size_type regular_chunks = n_chunks / nvecs;
-
1181 for (size_type i = 0; i < regular_chunks; ++i)
+
1180 const size_type regular_chunks = n_chunks / nvecs;
+
1181 for (size_type i = 0; i < regular_chunks; ++i)
1182 {
1183 VectorizedArray<Number> r0 = op.do_vectorized(index);
1184 VectorizedArray<Number> r1 = op.do_vectorized(index + nvecs);
1185 VectorizedArray<Number> r2 = op.do_vectorized(index + 2 * nvecs);
1186 VectorizedArray<Number> r3 = op.do_vectorized(index + 3 * nvecs);
1187 index += nvecs * 4;
-
1188 for (size_type j = 1; j < 8; ++j, index += nvecs * 4)
+
1188 for (size_type j = 1; j < 8; ++j, index += nvecs * 4)
1189 {
1190 r0 += op.do_vectorized(index);
1191 r1 += op.do_vectorized(index + nvecs);
@@ -1285,9 +1285,9 @@
1213 {
1214 VectorizedArray<Number> r0 = VectorizedArray<Number>(),
1215 r1 = VectorizedArray<Number>();
-
1216 const size_type start_irreg = regular_chunks * nvecs;
-
1217 for (size_type c = start_irreg; c < n_chunks; ++c)
-
1218 for (size_type j = 0; j < 32; j += 2 * nvecs, index += 2 * nvecs)
+
1216 const size_type start_irreg = regular_chunks * nvecs;
+
1217 for (size_type c = start_irreg; c < n_chunks; ++c)
+
1218 for (size_type j = 0; j < 32; j += 2 * nvecs, index += 2 * nvecs)
1219 {
1220 r0 += op.do_vectorized(index);
1221 r1 += op.do_vectorized(index + nvecs);
@@ -1389,14 +1389,14 @@
1353 void
1354 parallel_reduce(
/usr/share/doc/packages/dealii-openmpi2/doxygen/deal.tag differs (XML 1.0 document text) --- old//usr/share/doc/packages/dealii-openmpi2/doxygen/deal.tag 2022-07-10 00:00:00.000000000 +0000 +++ new//usr/share/doc/packages/dealii-openmpi2/doxygen/deal.tag 2022-07-10 00:00:00.000000000 +0000 @@ -12654,6 +12654,124 @@ parallel::fullydistributed + grid_refinement.h + /home/abuild/rpmbuild/BUILD/dealii-9.4.0/include/deal.II/distributed/ + distributed_2grid__refinement_8h.html + deal.II/base/config.h + deal.II/base/exceptions.h + deal.II/distributed/tria.h + deal.II/numerics/vector_tools_common.h + internal + internal::parallel + internal::parallel::distributed + internal::parallel::distributed::GridRefinement + internal::parallel::distributed::GridRefinement::RefineAndCoarsenFixedNumber + internal::parallel::distributed::GridRefinement::RefineAndCoarsenFixedFraction + parallel + parallel::distributed + parallel::distributed::GridRefinement + + std::pair< number, number > + compute_global_min_and_max_at_root + namespaceinternal_1_1parallel_1_1distributed_1_1GridRefinement.html + ab40a1818a12f6d7e475735da2ebd5119 + (const ::Vector< number > &criteria, const MPI_Comm &mpi_communicator) + + + number + compute_threshold + namespaceinternal_1_1parallel_1_1distributed_1_1GridRefinement_1_1RefineAndCoarsenFixedNumber.html + a52f09188b7e64fab06c9cef37ec2b83b + (const ::Vector< number > &criteria, const std::pair< double, double > &global_min_and_max, const types::global_cell_index n_target_cells, const MPI_Comm &mpi_communicator) + + + number + compute_threshold + namespaceinternal_1_1parallel_1_1distributed_1_1GridRefinement_1_1RefineAndCoarsenFixedFraction.html + a87680fbad4feafdb6b5a35cfc0aa66a5 + (const ::Vector< number > &criteria, const std::pair< double, double > &global_min_and_max, const double target_error, const MPI_Comm &mpi_communicator) + + + void + refine_and_coarsen_fixed_number + namespaceparallel_1_1distributed_1_1GridRefinement.html + aa2ffb707a796ae6dedb75036606ef2e6 + (parallel::distributed::Triangulation< dim, spacedim > &tria, const ::Vector< Number > &criteria, const double top_fraction_of_cells, const double bottom_fraction_of_cells, const types::global_cell_index max_n_cells=std::numeric_limits< types::global_cell_index >::max()) + + + void + refine_and_coarsen_fixed_fraction + namespaceparallel_1_1distributed_1_1GridRefinement.html + ae5159e3207f6786f0749fc0b66ab8ca3 + (parallel::distributed::Triangulation< dim, spacedim > &tria, const ::Vector< Number > &criteria, const double top_fraction_of_error, const double bottom_fraction_of_error, const VectorTools::NormType norm_type=VectorTools::NormType::L1_norm) + + + + grid_refinement.h + /home/abuild/rpmbuild/BUILD/dealii-9.4.0/include/deal.II/grid/ + grid_2grid__refinement_8h.html + deal.II/base/config.h + deal.II/base/exceptions.h + deal.II/numerics/vector_tools_common.h + GridRefinement + + std::pair< double, double > + adjust_refine_and_coarsen_number_fraction + namespaceGridRefinement.html + a66abaef71f9df5aa6712b230f81317ff + (const types::global_cell_index current_n_cells, const types::global_cell_index max_n_cells, const double top_fraction_of_cells, const double bottom_fraction_of_cells) + + + void + refine_and_coarsen_fixed_number + namespaceGridRefinement.html + a48e5395381ed87155942a61a1edd134d + (Triangulation< dim, spacedim > &triangulation, const Vector< Number > &criteria, const double top_fraction_of_cells, const double bottom_fraction_of_cells, const unsigned int max_n_cells=std::numeric_limits< unsigned int >::max()) + + + void + refine_and_coarsen_fixed_fraction + namespaceGridRefinement.html + ae90dc87c4db158b8d01f6d564ac614e5 + (Triangulation< dim, spacedim > &tria, const Vector< Number > &criteria, const double top_fraction, const double bottom_fraction, const unsigned int max_n_cells=std::numeric_limits< unsigned int >::max(), const VectorTools::NormType norm_type=VectorTools::NormType::L1_norm) + + + void + refine_and_coarsen_optimize + namespaceGridRefinement.html + a52ecb57c6fa25805a26727843c877932 + (Triangulation< dim, spacedim > &tria, const Vector< Number > &criteria, const unsigned int order=2) + + + void + refine + namespaceGridRefinement.html + a1cf30058b31ce7f9b389e8310bb9fc54 + (Triangulation< dim, spacedim > &tria, const Vector< Number > &criteria, const double threshold, const unsigned int max_to_mark=numbers::invalid_unsigned_int) + + + void + coarsen + namespaceGridRefinement.html + a5eee186cf23024df6854a9990a786703 + (Triangulation< dim, spacedim > &tria, const Vector< Number > &criteria, const double threshold) + + + static ::ExceptionBase & + ExcNegativeCriteria + group__Exceptions.html + ga9ce42c687ea46c8e1f5ef7930c752b8a + () + + + static ::ExceptionBase & + ExcInvalidParameterValue + group__Exceptions.html + gaa491ff8ba29177385ba9e21957e2ae21 + () + + + p4est_wrappers.h /home/abuild/rpmbuild/BUILD/dealii-9.4.0/include/deal.II/distributed/ p4est__wrappers_8h.html @@ -12785,6 +12903,51 @@ + tria.h + /home/abuild/rpmbuild/BUILD/dealii-9.4.0/include/deal.II/distributed/ + distributed_2tria_8h.html + deal.II/base/config.h + deal.II/base/smartpointer.h + deal.II/base/subscriptor.h + deal.II/base/template_constraints.h + deal.II/distributed/p4est_wrappers.h + deal.II/distributed/tria_base.h + deal.II/grid/tria.h + mpi.h + parallel::distributed::Triangulation + parallel::distributed::Triangulation< 1, spacedim > + parallel::distributed::TemporarilyMatchRefineFlags + parallel + parallel::distributed + + + tria.h + /home/abuild/rpmbuild/BUILD/dealii-9.4.0/include/deal.II/grid/ + grid_2tria_8h.html + deal.II/base/config.h + deal.II/base/geometry_info.h + deal.II/base/iterator_range.h + deal.II/base/point.h + deal.II/base/smartpointer.h + deal.II/base/subscriptor.h + deal.II/grid/cell_id.h + deal.II/grid/tria_description.h + deal.II/grid/tria_iterator_selector.h + deal.II/grid/tria_levels.h + deal.II/grid/tria_accessor.h + internal::TriangulationImplementation::NumberCache + internal::TriangulationImplementation::NumberCache< 1 > + internal::TriangulationImplementation::NumberCache< 2 > + internal::TriangulationImplementation::NumberCache< 3 > + Triangulation + Triangulation::DistortedCellList + Triangulation::CellWeightSum + Triangulation::Signals + Triangulation::Signals::LegacySignal + internal + internal::TriangulationImplementation + + tria_base.h /home/abuild/rpmbuild/BUILD/dealii-9.4.0/include/deal.II/distributed/ tria__base_8h.html @@ -12845,6 +13008,66 @@ internal::DoFHandlerImplementation + dof_handler.h + /home/abuild/rpmbuild/BUILD/dealii-9.4.0/include/deal.II/dofs/ + dofs_2dof__handler_8h.html + deal.II/base/config.h + deal.II/base/exceptions.h + deal.II/base/function.h + deal.II/base/index_set.h + deal.II/base/iterator_range.h + deal.II/base/smartpointer.h + deal.II/distributed/tria_base.h + deal.II/dofs/block_info.h + deal.II/dofs/dof_accessor.h + deal.II/dofs/dof_faces.h + deal.II/dofs/dof_iterator_selector.h + deal.II/dofs/dof_levels.h + deal.II/dofs/number_cache.h + deal.II/hp/fe_collection.h overalldiffered=1 (number of pkgs that are not bit-by-bit identical: 0 is good) overall=1